PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_9528AAD7C.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 435aa    MW: 48378.5 Da    PI: 6.7036
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_9528AAD7C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-10132173341
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                            + k+ rr+++NReAAr+sR+RKka+i++Le    k ++Le+e
  Traes_2BL_9528AAD7C.2 132 KEKVMRRLAQNREAARKSRLRKKAYIQQLESsriKLAQLEQE 173
                            56899************************9722244444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-8128178No hitNo description
SMARTSM003381.9E-5130190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22132176IPR004827Basic-leucine zipper domain
PfamPF001703.8E-7133173IPR004827Basic-leucine zipper domain
CDDcd147082.74E-21134187No hitNo description
SuperFamilySSF579593.44E-7134179No hitNo description
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
PfamPF141445.7E-26236313IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MELYPGYLED HFNIHKLSGT GGASPPEYMT SAAATQYAPA PLRMAMYERA PQQQHHHHHH  60
HQQQQQQQPQ LQPALGMWSS EPYKVDSGGQ ATSGSSIMEP DAKFDHAGLD DDPHMDELET  120
AGDADQGASK PKEKVMRRLA QNREAARKSR LRKKAYIQQL ESSRIKLAQL EQELQRTRQQ  180
QGMYVGSNPG ASLQRHHGGG SAGHFGFAAA GQMMMDPGVA EFEIEYGHWV DEQKRHTEEL  240
RSALQPGQAT SELELEVMVQ TGLANYDRLF RIKGAAAQAD VFCVMSGLWR SPAERFFLWI  300
GGFRPSEVLK ILSPQLEPMT DPQSVAVYAL QLTSAQAEDA LSQGMQKLQQ TLAESLTDPF  360
AAPDAYMVGA VEKLKGLVGF VQQADHLRLE TLQNMHRILT TRQAAKGLLV LGDYFQRLRA  420
LSTLWAARPR ESAIS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5964140.0KJ596414.1 Triticum aestivum transcription factor TGA4 (TGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580646.10.0PREDICTED: transcription factor TGA4-like
SwissprotQ391621e-115TGA4_ARATH; Transcription factor TGA4
TrEMBLW5BCU10.0W5BCU1_WHEAT; Uncharacterized protein
STRINGMLOC_61530.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35713877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-108TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]